Publications

2021

Fan, Yunfan; Gale, Andrew N; Bailey, Anna; Barnes, Kali; Colotti, Kiersten; Mass, Michal; Morina, Luke B; Robertson, Bailey; Schwab, Remy; Tselepidakis, Niki; Timp, Winston

Genome and transcriptome of a pathogenic yeast, Candida nivariensis Journal Article

bioRxiv, 2021.

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Thielen, Peter M; Wohl, Shirlee; Mehoke, Thomas; Ramakrishnan, Srividya; Kirsche, Melanie; Falade-Nwulia, Oluwaseun; Trovão, Nídia S; Ernlund, Amanda; Howser, Craig; Sadowski, Norah; Morris, Paul C; Hopkins, Mark; Schwartz, Matthew; Fan, Yunfan; Gniazdowski, Victoria; Lessler, Justin; Sauer, Lauren; Schatz, Michael C; Evans, Jared D; Ray, Stuart C; Timp, Winston; Mostafa, Heba H

Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area Journal Article

JCI Insight, 6 (6), 2021.

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Weinguny, Marcus; Klanert, Gerald; Eisenhut, Peter; Lee, Isac; Timp, Winston; Borth, Nicole

Subcloning induces changes in the DNA-methylation pattern of outgrowing Chinese hamster ovary cell colonies Journal Article

Biotechnology Journal, pp. 2000350, 2021.

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Gershman, Ariel; Romer, Tatiana G; Fan, Yunfan; Razaghi, Roham; Smith, Wendy A; Timp, Winston

De novo genome assembly of the tobacco hornworm moth (Manduca sexta) Journal Article

G3 Genes|Genomes|Genetics, 11 (1), 2021, ISSN: 2160-1836, (jkaa047).

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Clark, Helen R; McKenney, Connor; Livingston, Nathan M; Gershman, Ariel; Sajjan, Seema; Chan, Isaac S; Ewald, Andrew J; Timp, Winston; Wu, Bin; Singh, Abhyudai; Regot, Sergi

Epigenetically regulated digital signaling defines epithelial innate immunity at the tissue level Journal Article

Nature Communications, 12 (1), pp. 1–13, 2021.

BibTeX

2020

Lee, Isac; Razaghi, Roham; Gilpatrick, Timothy; Molnar, Michael; Gershman, Ariel; Sadowski, Norah; Sedlazeck, Fritz J; Hansen, Kasper D; Simpson, Jared T; Timp, Winston

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing Journal Article

Nature Methods, 17 (12), pp. 1191–1199, 2020, ISSN: 1548-7105.

Abstract | BibTeX | Altmetric | Links:

Kovaka, Sam; Fan, Yunfan; Ni, Bohan; Timp, Winston; Schatz, Michael C

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED Journal Article

Nature Biotechnology, pp. 1–11, 2020, ISSN: 1546-1696.

Abstract | BibTeX | Altmetric | Links:

Kovaka, Sam; Fan, Yunfan; Ni, Bohan; Timp, Winston; Schatz, Michael C

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED Journal Article

Nature Biotechnology, pp. 1–11, 2020, ISSN: 1546-1696, (Publisher: Nature Publishing Group).

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Pokrass, Michael J; Ryan, Kathleen A; Xin, Tianchi; Pielstick, Brittany; Timp, Winston; Greco, Valentina; Regot, Sergi

Cell-Cycle-Dependent ERK Signaling Dynamics Direct Fate Specification in the Mammalian Preimplantation Embryo Journal Article

Developmental Cell, 55 (3), pp. 328–340.e5, 2020, ISSN: 1878-1551.

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Vergara, Candelaria; Duggal, Priya; Thio, Chloe L; Valencia, Ana; Brien, Thomas R O’; Latanich, Rachel; Timp, Winston; Johnson, Eric O; Kral, Alex H; Mangia, Alessandra; Goedert, James J; Piazzola, Valeria; Mehta, Shruti H; Kirk, Gregory D; Peters, Marion G; Donfield, Sharyne M; Edlin, Brian R; Busch, Michael P; Alexander, Graeme; Murphy, Edward L; Kim, Arthur Y; Lauer, Georg M; Chung, Raymond T; Cramp, Matthew E; Cox, Andrea L; Khakoo, Salim I; Rosen, Hugo R; Alric, Laurent; Wheelan, Sarah J; Wojcik, Genevieve L; Thomas, David L; Taub, Margaret A

Multi-ancestry fine mapping of interferon lambda and the outcome of acute hepatitis C virus infection Journal Article

Genes & Immunity, pp. 1–12, 2020, ISSN: 1476-5470.

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Vergara, Candelaria; Duggal, Priya; Thio, Chloe L; Valencia, Ana; Brien, Thomas R O’; Latanich, Rachel; Timp, Winston; Johnson, Eric O; Kral, Alex H; Mangia, Alessandra; Goedert, James J; Piazzola, Valeria; Mehta, Shruti H; Kirk, Gregory D; Peters, Marion G; Donfield, Sharyne M; Edlin, Brian R; Busch, Michael P; Alexander, Graeme; Murphy, Edward L; Kim, Arthur Y; Lauer, Georg M; Chung, Raymond T; Cramp, Matthew E; Cox, Andrea L; Khakoo, Salim I; Rosen, Hugo R; Alric, Laurent; Wheelan, Sarah J; Wojcik, Genevieve L; Thomas, David L; Taub, Margaret A

Multi-ancestry fine mapping of interferon lambda and the outcome of acute hepatitis C virus infection Journal Article

Genes & Immunity, pp. 1–12, 2020, ISSN: 1476-5470.

Abstract | BibTeX | Altmetric | Links:

Pokrass, Michael J; Ryan, Kathleen A; Xin, Tianchi; Pielstick, Brittany; Timp, Winston; Greco, Valentina; Regot, Sergi

Cell-Cycle-Dependent ERK Signaling Dynamics Direct Fate Specification in the Mammalian Preimplantation Embryo Journal Article

Developmental Cell, 0 (0), 2020, ISSN: 1534-5807, (Publisher: Elsevier).

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Scott, Alison D; Zimin, Aleksey V; Puiu, Daniela; Workman, Rachael; Britton, Monica; Zaman, Sumaira; Caballero, Madison; Read, Andrew C; Bogdanove, Adam J; Burns, Emily; Wegrzyn, Jill; Timp, Winston; Salzberg, Steven L; Neale, David B

A Reference Genome Sequence for Giant Sequoia Journal Article

G3: Genes, Genomes, Genetics, 10 (11), pp. 3907–3919, 2020, ISSN: 2160-1836.

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Gale, Andrew N; Sakhawala, Rima M; Levitan, Anton; Sharan, Roded; Berman, Judith; Timp, Winston; Cunningham, Kyle W

Identification of Essential Genes and Fluconazole Susceptibility Genes in Candida glabrata by Profiling Hermes Transposon Insertions Journal Article

G3: Genes, Genomes, Genetics, 10 (10), pp. 3859–3870, 2020, ISSN: 2160-1836.

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Yee, Rebecca; Breitwieser, Florian P; Hao, Stephanie; Opene, Belita N A; Workman, Rachael E; Tamma, Pranita D; Dien-Bard, Jennifer; Timp, Winston; Simner, Patricia J

Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms Journal Article

European Journal of Clinical Microbiology & Infectious Diseases, 2020, ISSN: 1435-4373.

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Yee, Rebecca; Breitwieser, Florian P; Hao, Stephanie; Opene, Belita N A; Workman, Rachael E; Tamma, Pranita D; Dien-Bard, Jennifer; Timp, Winston; Simner, Patricia J

Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms Journal Article

European Journal of Clinical Microbiology & Infectious Diseases, 2020, ISSN: 1435-4373.

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Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; Fredrickson, Jeanne; Pak, Evgenia; Tigyi, Kristof; Kremitzki, Milinn; Markovic, Christopher; Maduro, Valerie; Dutra, Amalia; Bouffard, Gerard G; Chang, Alexander M; Hansen, Nancy F; Wilfert, Amy B; Thibaud-Nissen, Françoise; Schmitt, Anthony D; Belton, Jon-Matthew; Selvaraj, Siddarth; Dennis, Megan Y; Soto, Daniela C; Sahasrabudhe, Ruta; Kaya, Gulhan; Quick, Josh; Loman, Nicholas J; Holmes, Nadine; Loose, Matthew; Surti, Urvashi; ana Risques, Rosa; Lindsay, Tina Graves A; Fulton, Robert; Hall, Ira; Paten, Benedict; Howe, Kerstin; Timp, Winston; Young, Alice; Mullikin, James C; Pevzner, Pavel A; Gerton, Jennifer L; Sullivan, Beth A; Eichler, Evan E; Phillippy, Adam M

Telomere-to-telomere assembly of a complete human X chromosome Journal Article

Nature, pp. 1–9, 2020, ISSN: 1476-4687, (Publisher: Nature Publishing Group).

Abstract | BibTeX | Altmetric | Links:

Miga, Karen H; Koren, Sergey; Rhie, Arang; Vollger, Mitchell R; Gershman, Ariel; Bzikadze, Andrey; Brooks, Shelise; Howe, Edmund; Porubsky, David; Logsdon, Glennis A; Schneider, Valerie A; Potapova, Tamara; Wood, Jonathan; Chow, William; Armstrong, Joel; Fredrickson, Jeanne; Pak, Evgenia; Tigyi, Kristof; Kremitzki, Milinn; Markovic, Christopher; Maduro, Valerie; Dutra, Amalia; Bouffard, Gerard G; Chang, Alexander M; Hansen, Nancy F; Wilfert, Amy B; Thibaud-Nissen, Françoise; Schmitt, Anthony D; Belton, Jon-Matthew; Selvaraj, Siddarth; Dennis, Megan Y; Soto, Daniela C; Sahasrabudhe, Ruta; Kaya, Gulhan; Quick, Josh; Loman, Nicholas J; Holmes, Nadine; Loose, Matthew; Surti, Urvashi; ana Risques, Rosa; Lindsay, Tina Graves A; Fulton, Robert; Hall, Ira; Paten, Benedict; Howe, Kerstin; Timp, Winston; Young, Alice; Mullikin, James C; Pevzner, Pavel A; Gerton, Jennifer L; Sullivan, Beth A; Eichler, Evan E; Phillippy, Adam M

Telomere-to-telomere assembly of a complete human X chromosome Journal Article

Nature, pp. 1–9, 2020, ISSN: 1476-4687, (Publisher: Nature Publishing Group).

Abstract | BibTeX | Altmetric | Links:

Marrano, Annarita; Britton, Monica; Zaini, Paulo A; Zimin, Aleksey V; Workman, Rachael E; Puiu, Daniela; Bianco, Luca; Pierro, Erica Adele Di; Allen, Brian J; Chakraborty, Sandeep; Troggio, Michela; Leslie, Charles A; Timp, Winston; Dandekar, Abhaya; Salzberg, Steven L; Neale, David B

High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome Journal Article

GigaScience, 9 (5), 2020, ISSN: 2047-217X.

BibTeX | Altmetric | Links:

Stephenson, William; Razaghi, Roham; Busan, Steven; Weeks, Kevin M; Timp, Winston; Smibert, Peter

Direct detection of RNA modifications and structure using single molecule nanopore sequencing Journal Article

bioRxiv, 2020.

Abstract | BibTeX | Altmetric | Links:

McKelvey, Brittany A; Gilpatrick, Timothy; Wang, Yongchun; Timp, Winston; Umbricht, Christopher B; Zeiger, Martha A

Characterization of Allele-Specific Regulation of Telomerase Reverse Transcriptase in Promoter Mutant Thyroid Cancer Cell Lines Journal Article

Thyroid, 2020, ISSN: 1050-7256, (Publisher: Mary Ann Liebert, Inc., publishers).

Abstract | BibTeX | Altmetric | Links:

Olson, Nathan D; Kumar, Senthil M; Li, Shan; Braccia, Domenick J; Hao, Stephanie; Timp, Winston; Salit, Marc L; Stine, Colin O; Bravo, Hector Corrada

A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures. Journal Article

Microbiome, 8 (1), pp. 35, 2020, ISSN: 2049-2618.

Abstract | BibTeX | Altmetric | Links:

McKelvey, Brittany A; Gilpatrick, Timothy; Wang, Yongchun; Timp, Winston; Umbricht, Christopher B; Zeiger, Martha A

Characterization of Allele-Specific Regulation of Telomerase Reverse Transcriptase in Promoter Mutant Thyroid Cancer Cell Lines Journal Article

Thyroid, 2020, ISSN: 1050-7256, (Publisher: Mary Ann Liebert, Inc., publishers).

Abstract | BibTeX | Altmetric | Links:

Olson, Nathan D; Kumar, Senthil M; Li, Shan; Braccia, Domenick J; Hao, Stephanie; Timp, Winston; Salit, Marc L; Stine, Colin O; Bravo, Hector Corrada

A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures. Journal Article

Microbiome, 8 (1), pp. 35, 2020, ISSN: 2049-2618.

Abstract | BibTeX | Altmetric | Links:

Gilpatrick, Timothy; Lee, Isac; Graham, James E; Raimondeau, Etienne; Bowen, Rebecca; Heron, Andrew; Downs, Bradley; Sukumar, Saraswati; Sedlazeck, Fritz J; Timp, Winston

Targeted nanopore sequencing with Cas9-guided adapter ligation Journal Article

Nature Biotechnology, 2020, ISSN: 1546-1696.

Abstract | BibTeX | Altmetric | Links:

Vornhagen, Jay; Bassis, Christine M; Ramakrishnan, Srividya; Hein, Robert; Mason, Sophia; Bergman, Yehudit; Sunshine, Nicole; Fan, Yunfan; Timp, Winston; Schatz, Michael C; Young, Vincent B; Simner, Patricia J; Bachman, Michael A

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor Journal Article

bioRxiv, 2020.

Abstract | BibTeX | Altmetric | Links:

Gilpatrick, Timothy; Lee, Isac; Graham, James E; Raimondeau, Etienne; Bowen, Rebecca; Heron, Andrew; Downs, Bradley; Sukumar, Saraswati; Sedlazeck, Fritz J; Timp, Winston

Targeted nanopore sequencing with Cas9-guided adapter ligation Journal Article

Nature Biotechnology, 2020, ISSN: 1546-1696.

Abstract | BibTeX | Altmetric | Links:

Marrano, Annarita; Britton, Monica; Zaini, Paulo A; Zimin, Aleksey V; Workman, Rachael E; Puiu, Daniela; Bianco, Luca; Pierro, Erica Adele Di; Allen, Brian J; Chakraborty, Sandeep; Troggio, Michela; Leslie, Charles A; Timp, Winston; Dandekar, Abhaya; Salzberg, Steven L; Neale, David B

High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome Journal Article

GigaScience, 9 (5), 2020, ISSN: 2047-217X, (giaa050).

BibTeX | Altmetric | Links:

Aganezov, Sergey; Goodwin, Sara; Sherman, Rachel M; Sedlazeck, Fritz J; Arun, Gayatri; Bhatia, Sonam; Lee, Isac; Kirsche, Melanie; Wappel, Robert; Kramer, Melissa; Kostroff, Karen; Spector, David L; Timp, Winston; McCombie, Richard W; Schatz, Michael C

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing Journal Article

Genome Research, 2020.

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Gale, Andrew N; Sakhawala, Rima M; Levitan, Anton; Sharan, Roded; Berman, Judith; Timp, Winston; Cunningham, Kyle W

Identification of Essential Genes and Fluconazole Susceptibility Genes in Candida glabrata by Profiling Hermes Transposon Insertions Journal Article

G3: Genes, Genomes, Genetics, 2020.

Abstract | BibTeX | Altmetric | Links:

Roach, Nathan P; Sadowski, Norah; Alessi, Amelia F; Timp, Winston; Taylor, James; Kim, John K

The full-length transcriptome of C. elegans using direct RNA sequencing Journal Article

Genome Research, 2020.

Abstract | BibTeX | Altmetric | Links:

Scott, Alison D; Zimin, Aleksey V; Puiu, Daniela; Workman, Rachael; Britton, Monica; Zaman, Sumaira; Caballero, Madison; Read, Andrew C; Bogdanove, Adam J; Burns, Emily; Wegrzyn, Jill; Timp, Winston; Salzberg, Steven L; Neale, David B

A Reference Genome Sequence for Giant Sequoia Journal Article

G3: Genes, Genomes, Genetics, 10 (11), pp. 3907–3919, 2020.

Abstract | BibTeX | Altmetric | Links:

Stephenson, William; Razaghi, Roham; Busan, Steven; Weeks, Kevin M; Timp, Winston; Smibert, Peter

Direct detection of RNA modifications and structure using single molecule nanopore sequencing Journal Article

bioRxiv, 2020.

Abstract | BibTeX | Altmetric | Links:

Timp, Winston; Timp, Gregory

Beyond mass spectrometry, the next step in proteomics Journal Article

Science Advances, 6 (2), 2020.

Abstract | BibTeX | Altmetric | Links:

Vornhagen, Jay; Bassis, Christine M; Ramakrishnan, Srividya; Hein, Robert; Mason, Sophia; Bergman, Yehudit; Sunshine, Nicole; Fan, Yunfan; Timp, Winston; Schatz, Michael C; Young, Vincent B; Simner, Patricia J; Bachman, Michael A

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor Journal Article

bioRxiv, 2020.

Abstract | BibTeX | Altmetric | Links:

2019

Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston

Nanopore native RNA sequencing of a human poly(A) transcriptome Journal Article

Nature Methods, pp. 1–9, 2019, ISSN: 1548-7105.

Abstract | BibTeX | Altmetric | Links:

Workman, Rachael E; Tang, Alison D; Tang, Paul S; Jain, Miten; Tyson, John R; Razaghi, Roham; Zuzarte, Philip C; Gilpatrick, Timothy; Payne, Alexander; Quick, Joshua; Sadowski, Norah; Holmes, Nadine; de Jesus, Jaqueline Goes; Jones, Karen L; Soulette, Cameron M; Snutch, Terrance P; Loman, Nicholas; Paten, Benedict; Loose, Matthew; Simpson, Jared T; Olsen, Hugh E; Brooks, Angela N; Akeson, Mark; Timp, Winston

Nanopore native RNA sequencing of a human poly(A) transcriptome Journal Article

Nature Methods, pp. 1–9, 2019, ISSN: 1548-7105.

Abstract | BibTeX | Altmetric | Links:

Sakowski, Eric; Uritskiy, Gherman; Cooper, Rachel; Gomes, Maya; McLaren, Michael R; Meisel, Jacquelyn S; Mickol, Rebecca L; Mintz, David C; Mongodin, Emmanuel F; Pop, Mihai; Rahman, Mohammad Arifur; Sanchez, Alvaro; Timp, Winston; Vela, Jeseth Delgado; Wolz, Carly Muletz; Zackular, Joseph P; Chopyk, Jessica; Commichaux, Seth; Davis, Meghan; Dluzen, Douglas; Ganesan, Sukirth M; Haruna, Muyideen; Nasko, Dan; Regan, Mary J; Sarria, Saul; Shah, Nidhi; Stacy, Brook; Taylor, Dylan; DiRuggiero, Jocelyne; Preheim, Sarah P

Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019 Journal Article

mSystems, 4 (5), 2019.

Abstract | BibTeX | Altmetric | Links:

Sakowski, Eric; Uritskiy, Gherman; Cooper, Rachel; Gomes, Maya; McLaren, Michael R; Meisel, Jacquelyn S; Mickol, Rebecca L; Mintz, David C; Mongodin, Emmanuel F; Pop, Mihai; Rahman, Mohammad Arifur; Sanchez, Alvaro; Timp, Winston; Vela, Jeseth Delgado; Wolz, Carly Muletz; Zackular, Joseph P; Chopyk, Jessica; Commichaux, Seth; Davis, Meghan; Dluzen, Douglas; Ganesan, Sukirth M; Haruna, Muyideen; Nasko, Dan; Regan, Mary J; Sarria, Saul; Shah, Nidhi; Stacy, Brook; Taylor, Dylan; DiRuggiero, Jocelyne; Preheim, Sarah P

Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019 Journal Article

mSystems, 4 (5), 2019.

Abstract | BibTeX | Altmetric | Links:

Tiek, Deanna M; Razaghi, Roham; Jin, Lu; Sadowski, Norah; Alamillo-Ferrer, Carla; Hogg, Robert J; Haddad, Bassem R; Drewry, David H; Wells, Carrow I; Pickett, Julie E; Zuercher, William J; Timp, Winston; Riggins, Rebecca B

Targeting destabilized DNA G-quadruplexes and aberrant splicing in drug-resistant glioblastoma Journal Article

bioRxiv, 2019.

Abstract | BibTeX | Altmetric | Links:

Tiek, Deanna M; Razaghi, Roham; Jin, Lu; Sadowski, Norah; Alamillo-Ferrer, Carla; Hogg, Robert J; Haddad, Bassem R; Drewry, David H; Wells, Carrow I; Pickett, Julie E; Zuercher, William J; Timp, Winston; Riggins, Rebecca B

Targeting destabilized DNA G-quadruplexes and aberrant splicing in drug-resistant glioblastoma Journal Article

bioRxiv, 2019.

Abstract | BibTeX | Altmetric | Links:

Allen, Jawara; Hao, Stephanie; Sears, Cynthia L; Timp, Winston

Epigenetic changes induced by Bacteroides fragilis toxin (BFT) Journal Article

Infection and Immunity, 2019, ISSN: 0019-9567, 1098-5522.

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Allen, Jawara; Hao, Stephanie; Sears, Cynthia L; Timp, Winston

Epigenetic changes induced by Bacteroides fragilis toxin (BFT) Journal Article

Infection and Immunity, 2019, ISSN: 0019-9567, 1098-5522.

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Briem, Eirikur; Budkova, Zuzana; Sigurdardottir, Anna Karen; Hilmarsdottir, Bylgja; Kricker, Jennifer; Timp, Winston; Magnusson, Magnus Karl; Traustadottir, Gunnhildur Asta; Gudjonsson, Thorarinn

MiR-203a is differentially expressed during branching morphogenesis and EMT in breast progenitor cells and is a repressor of peroxidasin Journal Article

Mechanisms of Development, 155 , pp. 34–47, 2019, ISSN: 0925-4773.

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Briem, Eirikur; Budkova, Zuzana; Sigurdardottir, Anna Karen; Hilmarsdottir, Bylgja; Kricker, Jennifer; Timp, Winston; Magnusson, Magnus Karl; Traustadottir, Gunnhildur Asta; Gudjonsson, Thorarinn

MiR-203a is differentially expressed during branching morphogenesis and EMT in breast progenitor cells and is a repressor of peroxidasin Journal Article

Mechanisms of Development, 155 , pp. 34–47, 2019, ISSN: 0925-4773.

BibTeX | Altmetric | Links:

Tamma, Pranita D; Fan, Yunfan; Bergman, Yehudit; Pertea, Geo; Kazmi, Abida; Lewis, Shawna; Carroll, Karen C; Schatz, Michael C; Timp, Winston; Simner, Patricia J

Applying Rapid Whole Genome Sequencing to Predict Phenotypic Antimicrobial Susceptibility Testing Results Among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates Journal Article

Antimicrobial Agents and Chemotherapy, 63 (1), pp. e01923–18, 2019, ISSN: 0066-4804.

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Drewes, Julia L; Corona, Alina; Sanchez, Uriel; Fan, Yunfan; Hourigan, Suchitra K; Weidner, Melissa; Sidhu, Sarah D; Simner, Patricia J; Wang, Hao; Timp, Winston; Oliva-Hemker, Maria; Sears, Cynthia L

Transmission and clearance of potential procarcinogenic bacteria during fecal microbiota transplantation for recurrent Clostridioides difficile Journal Article

JCI Insight, 4 (19), 2019.

Abstract | BibTeX | Altmetric | Links:

Avin, Brittany A; Wang, Yongchun; Gilpatrick, Timothy; Workman, Rachael E; Lee, Isac; Timp, Winston; Umbricht, Christopher B; Zeiger, Martha A

Characterization of human telomerase reverse transcriptase promoter methylation and transcription factor binding in differentiated thyroid cancer cell lines Journal Article

Genes, Chromosomes & Cancer, 2019, ISSN: 1098-2264.

Abstract | BibTeX | Altmetric | Links:

Tamma, Pranita D; Fan, Yunfan; Bergman, Yehudit; Pertea, Geo; Kazmi, Abida; Lewis, Shawna; Carroll, Karen C; Schatz, Michael C; Timp, Winston; Simner, Patricia J

Applying Rapid Whole Genome Sequencing to Predict Phenotypic Antimicrobial Susceptibility Testing Results Among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates Journal Article

Antimicrobial Agents and Chemotherapy, 63 (1), pp. e01923–18, 2019, ISSN: 0066-4804.

Abstract | BibTeX | Altmetric | Links:

Drewes, Julia L; Corona, Alina; Sanchez, Uriel; Fan, Yunfan; Hourigan, Suchitra K; Weidner, Melissa; Sidhu, Sarah D; Simner, Patricia J; Wang, Hao; Timp, Winston; Oliva-Hemker, Maria; Sears, Cynthia L

Transmission and clearance of potential procarcinogenic bacteria during fecal microbiota transplantation for recurrent Clostridioides difficile Journal Article

JCI Insight, 4 (19), 2019.

Abstract | BibTeX | Altmetric | Links: